Computing Publications

2023 - Novel deep learning method for coronary artery tortuosity detection through coronary angiography

Title: Novel deep learning method for coronary artery tortuosity detection through coronary angiography

Authors: Miriam Cobo, Francisco Pérez-Rojas, Constanza Gutiérrez-Rodríguez, Ignacio Heredia, Patricio Maragaño-Lizama, Francisca Yung-Manriquez, Lara Lloret Iglesias & José A. Vega

Journal: Scientific reports

2023 - Forecasting COVID-19 spreading through an ensemble of classical and machine learning models: Spain’s case study

Title: Forecasting COVID-19 spreading through an ensemble of classical and machine learning models: Spain’s case study

Authors: Ignacio Heredia Cachá, Judith Sáinz-Pardo Díaz, María Castrillo and Álvaro López García

Journal: Scientific reports

2023 - A second update on mapping the human genetic architecture of COVID-19

Title: A second update on mapping the human genetic architecture of COVID-19

Authors: Lara Lloret Iglesias (within the Host Genetics Initiative)

Journal: Nature

2023 - A deep learning model for prognosis prediction after intracranial hemorrhage

Title: A deep learning model for prognosis prediction after intracranial hemorrhage

Authors: Amaia Perez del Barrio, Anna Salut Esteve Domínguez, Pablo Menéndez Fernández‐Miranda, Pablo Sanz Bellón, David Rodríguez González, Lara Lloret Iglesias, Enrique Marques Fraguela, Andrés A González Mandly, José A Vega

2022 - Study of the performance and scalability of federated learning for medical imaging with intermittent clients

Title: Study of the performance and scalability of federated learning for medical imaging with intermittent clients

Authors: Judith Sáinz-Pardo Díaz and Álvaro López García

Journal: Neurocomputing

2022 - Structural brain alterations associated with suicidal thoughts and behaviors in young people: results from 21 international studies from the ENIGMA Suicidal Thoughts and Behaviours consortium

Title: Structural brain alterations associated with suicidal thoughts and behaviors in young people: results from 21 international studies from the ENIGMA Suicidal Thoughts and Behaviours consortium

Authors: van Velzen LS, Dauvermann MR, Colic L, Villa LM, Savage HS, Toenders YJ, Zhu AH, Bright JK, Campos AI, Salminen LE, Ambrogi S, Ayesa-Arriola R, Banaj N, Başgöze Z, Bauer J, Blair K, Blair RJ, Brosch K, Cheng Y, Colle R, Connolly CG, Corruble E, Couvy-Duchesne B, Crespo-Facorro B, Cullen KR, Dannlowski U, Davey CG, Dohm K, Fullerton JM, Gonul AS, Gotlib IH, Grotegerd D, Hahn T, Harrison BJ, He M, Hickie IB, Ho TC, Iorfino F, Jansen A, Jollant F, Kircher T, Klimes-Dougan B, Klug M, Leehr EJ, Lippard ETC, McLaughlin KA, Meinert S, Miller AB, Mitchell PB, Mwangi B, Nenadić I, Ojha A, Overs BJ, Pfarr JK, Piras F, Ringwald KG, Roberts G, Romer G, Sanches M, Sheridan MA, Soares JC, Spalletta G, Stein F, Teresi GI, Tordesillas-Gutiérrez D, Uyar-Demir A, van der Wee NJA, van der Werff SJ, Vermeiren RRJM, Winter A, Wu MJ, Yang TT, Thompson PM, Rentería ME, Jahanshad N, Blumberg HP, van Harmelen AL; ENIGMA Suicidal Thoughts and Behaviours Consortium, Schmaal L.

2022 - Rationale and design of the brain magnetic resonance imaging protocol for FutureMS: a longitudinal multi-centre study of newly diagnosed patients with relapsing-remitting multiple sclerosis in Scotland

Title: Rationale and design of the brain magnetic resonance imaging protocol for FutureMS: a longitudinal multi-centre study of newly diagnosed patients with relapsing-remitting multiple sclerosis in Scotland

Authors: Rozanna Meijboom, Stewart J. Wiseman, Elizabeth N. York, Mark E. Bastin, Maria del C. Valdés Hernández, Michael J. Thrippleton, Daisy Mollison, Nicole White, Agniete Kampaite, Koy Ng Kee Kwong, David Rodriguez Gonzalez, Dominic Job, Christine Weaver, Patrick K. A. Kearns, Peter Connick, Siddharthan Chandran, Adam D. Waldman

2022 - Obesity and brain structure in schizophrenia - ENIGMA study in 3021 individuals

Title: Obesity and brain structure in schizophrenia - ENIGMA study in 3021 individuals

Authors: McWhinney SR, Brosch K, Calhoun VD, Crespo-Facorro B, Crossley NA, Dannlowski U, Dickie E, Dietze LMF, Donohoe G, Du Plessis S, Ehrlich S, Emsley R, Furstova P, Glahn DC, Gonzalez-Valderrama A, Grotegerd D, Holleran L, Kircher TTJ, Knytl P, Kolenic M, Lencer R, Nenadić I, Opel N, Pfarr JK, Rodrigue AL, Rootes-Murdy K, Ross AJ, Sim K, Škoch A, Spaniel F, Stein F, Švancer P, Tordesillas-Gutiérrez D, Undurraga J, Váquez-Bourgon J, Voineskos A, Walton E, Weickert TW, Weickert CS, Thompson PM, van Erp TGM, Turner JA, Hajek T.

2022 - Genetic variants associated with longitudinal changes in brain structure across the lifespan

Title: Genetic variants associated with longitudinal changes in brain structure across the lifespan

Authors: Brouwer RM, Klein M, Grasby KL, Schnack HG, Jahanshad N, Teeuw J, Thomopoulos SI, Sprooten E, Franz CE, Gogtay N, Kremen WS, Panizzon MS, Olde Loohuis LM, Whelan CD, Aghajani M, Alloza C, Alnæs D, Artiges E, Ayesa-Arriola R, Barker GJ, Bastin ME, Blok E, Bøen E, Breukelaar IA, Bright JK, Buimer EEL, Bülow R, Cannon DM, Ciufolini S, Crossley NA, Damatac CG, Dazzan P, de Mol CL, de Zwarte SMC, Desrivières S, Díaz-Caneja CM, Doan NT, Dohm K, Fröhner JH, Goltermann J, Grigis A, Grotegerd D, Han LKM, Harris MA, Hartman CA, Heany SJ, Heindel W, Heslenfeld DJ, Hohmann S, Ittermann B, Jansen PR, Janssen J, Jia T, Jiang J, Jockwitz C, Karali T, Keeser D, Koevoets MGJC, Lenroot RK, Malchow B, Mandl RCW, Medel V, Meinert S, Morgan CA, Mühleisen TW, Nabulsi L, Opel N, de la Foz VO, Overs BJ, Paillère Martinot ML, Redlich R, Marques TR, Repple J, Roberts G, Roshchupkin GV, Setiaman N, Shumskaya E, Stein F, Sudre G, Takahashi S, Thalamuthu A, Tordesillas-Gutiérrez D, van der Lugt A, van Haren NEM, Wardlaw JM, Wen W, Westeneng HJ, Wittfeld K, Zhu AH, Zugman A, Armstrong NJ, Bonfiglio G, Bralten J, Dalvie S, Davies G, Di Forti M, Ding L, Donohoe G, Forstner AJ, Gonzalez-Peñas J, Guimaraes JPOFT, Homuth G, Hottenga JJ, Knol MJ, Kwok JBJ, Le Hellard S, Mather KA, Milaneschi Y, Morris DW, Nöthen MM, Papiol S, Rietschel M, Santoro ML, Steen VM, Stein JL, Streit F, Tankard RM, Teumer A, van 't Ent D, van der Meer D, van Eijk KR, Vassos E, Vázquez-Bourgon J, Witt SH; IMAGEN Consortium, Adams HHH, Agartz I, Ames D, Amunts K, Andreassen OA, Arango C, Banaschewski T, Baune BT, Belangero SI, Bokde ALW, Boomsma DI, Bressan RA, Brodaty H, Buitelaar JK, Cahn W, Caspers S, Cichon S, Crespo-Facorro B, Cox SR, Dannlowski U, Elvsåshagen T, Espeseth T, Falkai PG, Fisher SE, Flor H, Fullerton JM, Garavan H, Gowland PA, Grabe HJ, Hahn T, Heinz A, Hillegers M, Hoare J, Hoekstra PJ, Ikram MA, Jackowski AP, Jansen A, Jönsson EG, Kahn RS, Kircher T, Korgaonkar MS, Krug A, Lemaitre H, Malt UF, Martinot JL, McDonald C, Mitchell PB, Muetzel RL, Murray RM, Nees F, Nenadić I, Oosterlaan J, Ophoff RA, Pan PM, Penninx BWJH, Poustka L, Sachdev PS, Salum GA, Schofield PR, Schumann G, Shaw P, Sim K, Smolka MN, Stein DJ, Trollor JN, van den Berg LH, Veldink JH, Walter H, Westlye LT, Whelan R, White T, Wright MJ, Medland SE, Franke B, Thompson PM, Hulshoff Pol HE.

2022 - Artificial intelligence to estimate wine volume from single-view images

Title: Artificial intelligence to estimate wine volume from single-view images

Authors: Miriam Cobo, Ignacio Heredia, Fernando Aguilar, Lara Lloret Iglesias, Daniel García, Begoña Bartolomé, M. Victoria Moreno-Arribas, Silvia Yuste, Patricia Pérez-Matute, Maria-Jose Motilva

Journal: Heliyon

2022 - Artificial Intelligence in Radiology: an introduction to the most important concepts

Title: Artificial Intelligence in Radiology: an introduction to the most important concept

Authors: Pérez Del Barrio A, Menéndez Fernández-Miranda P, Sanz Bellón P, Lloret Iglesias L, Rodríguez González D.

Journal: Radiologia (Engl Ed)

2022 - A Python library to check the level of anonymity of a dataset

Title: A Python library to check the level of anonymity of a dataset

Authors: Judith Sáinz-Pardo Díaz and Álvaro López García

Journal: Scientific Data

2022 - A mathematical justification for metronomic chemotherapy in oncology

Title: A mathematical justification for metronomic chemotherapy in oncology

Authors: Luis Alberto Fernández, Cecilia Pola and Judith Sáinz-Pardo

Journal: Mathematical Modelling of Natural Phenomena

2022 - A first update on mapping the human genetic architecture of COVID-19

Title: A first update on mapping the human genetic architecture of COVID-19

Authors: Lara Lloret Iglesias (within the Host Genetics Initiative)

Journal: Nature

2021 - Utilidad de los enjuagues con povidona yodada y peroxido de hidrogeno en pacientes con covid-19

Title: Utilidad de los enjuagues con povidona yodada y peroxido de hidrogeno en pacientes con covid-19

Authors: Daniel Pablo-Marcos, Beatriz Abascal, Lara Lloret, Manuel Gutiérrez Cuadra, Nieves Velasco, Carmen Valero

Journal: Enfermedades infecciosas y microbiología clínica (2021)

2021 - Machine Learning Methods for the Prediction of the Inclusion Content of Clean Steel Fabricated by Electric Arc Furnace and Rolling

Title: Machine Learning Methods for the Prediction of the Inclusion Content of Clean Steel Fabricated by Electric Arc Furnace and Rolling

Authors: Estela Ruiz, Diego Ferreño, Miguel Cuartas, Lara Lloret, Pablo M. Ruiz del Árbol, Ana López, Francesc Esteve and Federico Gutiérrez-Solana

Journal: METALS (2021)

2021 - Developing a Training Web Application for Improving the COVID-19 Diagnostic Accuracy on Chest X-ray

Title: Developing a Training Web Application for Improving the COVID-19 Diagnostic Accuracy on Chest X-ray

Authors: P. Menéndez Fernández-Miranda, P. Sanz Bellón, A. Pérez del Barrio, L. Lloret Iglesias, P. Solís García, F. Aguilar-Gómez, D. Rodríguez González & J. A. Vega

Journal: Journal of Digital Imaging (2021)

2021 - A primer on deep learning and convolutional neural networks for clinicians

Title: A primer on deep learning and convolutional neural networks for clinicians

Authors: Lara Lloret Iglesias, Pablo Sanz Bellón, Amaia Pérez del Barrio, Pablo Menéndez Fernández-Miranda, David Rodríguez González, José A. Vega, Andrés A. González Mandly & José A. Parra Blanco

Journal: Insights into Imaging

2020 - Software Quality Assurance in INDIGO-DataCloud project: a converging evolution of software engineering practices to support European Research e-Infrastructures

Title: Software Quality Assurance in INDIGO-DataCloud project: a converging evolution of software engineering practices to support European Research e-Infrastructures

Authors: P. Orviz Fernandez, M. David, D. C. Duma, E. Ronchieri, J. Gomes, D. Salomoni

Journal: Journal of Grid Computing 18, 81–98 (2020). ISSN: 1572-9184.

2020 - Estimation of high frequency nutrient concentrations from water quality surrogates using machine learning methods

Title: Estimation of high frequency nutrient concentrations from water quality surrogates using machine learning methods

Authors: M. Castrillo and Á. LópezGarcía

Journal: Water Research, 172:115490, 04 2020

2020 - Deep learning for proactive network monitoring and security protection

Title: Deep learning for proactive network monitoring and security protection

Authors: G.Nguyen, S.Dlugolinsky, V.Tran, and Á.López García

Journal: IEEE Access, 8:19696–19716, 2020

2020 - DEEPaaS API: a REST API for machine learning and deep learning models

Title: DEEPaaS API: a REST API for machine learning and deep learning models

Authors: Á. López García

Journal: Journal of Open Source Software, 4(42):1517, 2019

2020 - DataCloud infrastructure to manage FAIR environmental data

Title: DataCloud infrastructure to manage FAIR environmental data

Authors: F. Aguilar

Journal: Journal of Instrumentation, Volume 15, April 2020
International Summer School on INtelligent signal processing for FrontIEr Research and Industry (INFIERI 2019)

2020 - A cloud-based framework for machine learning workloads and applications

Title: A cloud-based framework for machine learning workloads and applications

Authors: Á. LópezGarcía, J.Marco de Lucas, M.Antonacci, W.zu Castell, M.David, M.Hardt, L.Lloret Iglesias, G.Moltó, M.Plociennik, V.Tran, A.S. Alic, M.Caballer, I.Campos Plasencia, A.Costantini, S.Dlugolinsky, D.C. Duma, G.Donvito, J.Gomes, I.H. Cacha, K.Ito, V.Y. Kozlov, G.Nguyen, P.Orviz Fernández, Z.Šustr, and P.Wolniewicz.

2019 - Open is not enough

Title: Open is not enough

Authors: X. Chen, S. Dallmeier-Tiessen, R. Dasler, S. Feger, P. Fokianos, J. Benito Gonzalez, H. Hirvonsalo, D. Kousidis, A. Lavasa, S. Mele, D. Rodriguez Rodriguez, T. Šimko, T. Smith, A. Trisovic, A. Trzcinska, I. Tsanaktsidis, M. Zimmermann, K. Cranmer, L. Heinrich, G. Watts, M. Hildreth, L. Lloret Iglesias, K. Lassila-Perini, S. Neubert

2019 - Machine Learning and Deep Learning frameworks and libraries for large-scale data mining: a survey

Title: Machine Learning and Deep Learning frameworks and libraries for large-scale data mining: a survey

Authors: Giang Nguyen, Stefan Dlugolinsky, Martin Bobák, Viet Tran, Álvaro López García, Ignacio Heredia, Peter Malík, Ladislav Hluchý

Journal: Artificial Intelligence Review - 2019-01-19

DOI: 10.1007/s10462-018-09679-z

2019 - An efficient cloud scheduler design supporting preemptible instances

Title: An efficient cloud scheduler design supporting preemptible instances

Authors: A. López-García, E. Fernández-del-Castillo, and I. Campos Plasencia

Journal: Future Generation Computer Systems 95 (2019) 68–78

DOI: 10.1016/j.future.2018.12.057

2018 - umd-verification: Automation of Software Validation for the EGI Federated e-Infrastructure

Title: umd-verification: Automation of Software Validation for the EGI Federated e-Infrastructure

Authors: P. Orviz, J. Pina, A. López-Garcia, I. Campos, J. Gomes and M. David

Journal: Journal of Grid Computing, 16(4), 683-696 (2018)

DOI: 10.1007/s10723-018-9454-2

2018 - Resource Provisioning in Science Clouds: requirements and challenges

Title: Resource Provisioning in Science Clouds: requirements and challenges

Authors: A. López-García, E. Fernández-del-Castillo, P. Orviz, I. Campos Plasencia and J. Marco de Lucas

Journal: Software Practice and Experience, vol. 48 Issue 3; pp 486–498 (2018)

DOI: 10.1002/spe.2544

2018 - Orchestrating Complex Application Architectures in Heterogeneous Clouds

Title: Orchestrating Complex Application Architectures in Heterogeneous Clouds

Authors: Miguel Caballer, Sahdev Zala, Álvaro López García, Germán Moltó, Pablo Orviz Fernández, Mathieu Velten

Journal: Journal of Grid Computing - 2018-03-09

DOI: 10.1007/s10723-017-9418-y

2018 - INDIGO-DataCloud: a Platform to Facilitate Seamless Access to E-Infrastructures

Title: INDIGO-DataCloud: a Platform to Facilitate Seamless Access to E-Infrastructures

Authors: D. Salomoni et. Al (INDIGO-Datacloud Collaboration)

Journal: Journal of Grid Computing 16 (3) pp 381-408 (2018)

DOI: 10.1007/s10723-018-9453-3

2018 - Enabling rootless Linux Containers in multi-user environments: the udocker tool

Title: Enabling rootless Linux Containers in multi-user environments: the udocker tool

Authors: J. Gomes, I. Campos, E. Bagnaschi, M. David, . Alves, J. Martins, J. Pina, A. Lopez-Garcia and P. Orviz

Journal: Computing Physics Communications Volume 232, pg. 84-07 (2018)

DOI: 10.1016/j.cpc.2018.05.021

2016 - Standards for enabling heterogeneous IaaS cloud federations

Title: Standards for enabling heterogeneous IaaS cloud federations

Authors: López García Á., Fernández del Castillo E., Orviz Fernández P.

Journal: Computer Standards and Interfaces - 2016

DOI: 10.1016/j.csi.2016.02.002

2016 - ooi: OpenStack OCCI interface

Title: ooi: OpenStack OCCI interface

Authors: López García Á., Fernández del Castillo E., Orviz Fernández P.

Journal: SoftwareX - Jan/2016

DOI: 10.1016/j.softx.2016.01.001

2016 - Efficient image deployment in cloud environments

Title: Efficient image deployment in cloud environments

Authors: López García Á., Fernández del Castillo E.

Journal: Journal of Network and Computer Applications - 2016-03

DOI: 10.1016/j.jnca.2015.10.015

2015 - The EGI Federated Cloud e-Infrastructure

Title: The EGI Federated Cloud e-Infrastructure

Authors: Enol Fernández del Castillo, Diego Scardaci, Álvaro López arcía

Journal: Procedia Computer Science - 2015

DOI: 10.1016/j.procs.2015.09.235

2014 - Validation of Grid Middleware for the European Grid Infrastructure

Title: Validation of Grid Middleware for the European Grid Infrastructure

Authors: M. David, G. Borges, J. Gomes, J. Pina, I. Campos, T. Ferrari, et al.

Journal: Journal of Grid Computing, 12(3) pp. 543-558 (2014)

DOI: 10.1007/s10723-014-9301-z

2013 - Phenomenology Tools on Cloud Infrastructures using OpenStack

Title: Phenomenology tools on cloud infrastructures using OpenStack

Authors: I. Campos, E. Fernández-del-Castillo, S. Heinemeyer, A. Lopez-Garcia, F. Pahlen, G. Borges

Journal: The European Physical Journal C - 2013-04

DOI: 10.1140/epjc/s10052-013-2375-0

2013 - Approaches to Distributed Execution of ScientificWorkflows in Kepler

Title: Approaches to Distributed Execution of ScientificWorkflows in Kepler

Authors: M. Plociennik, T. Zok, D. Abramson, M. Lopez-Caniego, I. Campos, B. Palak, M. Owsiak, I. Altintas, J. Wang, D. Crawl, F. Imbeaux, B. Guillerminet

Journal: Fundamenta Informaticae vol. 128 pp. 218-302 (2013)

DOI: 10.3233/FI-2013-947

2012 - Software Provisioning process for EGI

Title: Software Provisioning process for EGI

Authors: Mario David, Álvaro López García, Pablo Orviz

Journal: Computing and Informatics, 31 (2012) pp 135-148

EID: 2-s2.0-84861326215

2012 - Integrating PROOF Analysis in Cloud and Batch Clusters

Title: Integrating PROOF Analysis in Cloud and Batch Clusters

Authors: Ana Y Rodríguez-Marrero, Isidro González Caballero, Alberto Cuesta Noriega, Enol Fernández-del-Castillo, Álvaro López García, Jesús Marco de Lucas and Francisco Matorras Weinig

Journal: Journal of Physics: Conference Series - 2012/12

DOI: 10.1088/1742-6596/396/3/032091

2012 - Grid Engine batch system integration in the EMI era

Title: Grid Engine batch system integration in the EMI era

Authors: R. Rosende Dopazo, A.L. Garcia, G. Borges, A. Simon Garcia, E. Freire, E. Fernandez Del Castillo, P. Orviz Fernández, C. Fernandez, A. Lopez Garcia

Journal: Proceedings of Science - 2012

EID: 2-s2.0-84861314063

DOI: 10.22323/1.162.0083

2012 - Fostering multi-scientific usage in the Iberian production infrastructure

Title: Fostering multi-scientific usage in the Iberian production infrastructure

Authors: G. Borges et al.

Journal: Computing and Informatics, 31 (2012) pp 61-72

EID: 2-s2.0-84861314063

2010 - XMM–Newton Data Analysis with SAS Software Over GRID Technology

Title: XMM–Newton Data Analysis with SAS Software Over GRID Technology

Authors: M. T. Ceballos, I. Campos, P. Orviz, D. Tapiador, R. Álvarez, A. Ibarra, C. Gabriel, J. R. Rodón

Journal: Highlights of Spanish Astrophysics V

DOI: 10.1007/978-3-642-11250-8_136

ISBN: 9783642112492

2008 - Workflow-based data parallel applications on the EGEE production grid infrastructure

Title: Workflow-based data parallel applications on the EGEE production grid infrastructure

Authors: Johan Montagnat, Tristan Glatard, Isabel Campos Plasencia, Francisco Castejón, Xavier Pennec, Giuliano Taffoni, Vladimir Voznesensky, Claudio Vuerli

Journal: Journal of Grid Computing - Sep/2008

DOI: 10.1007/s10723-008-9108-x